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Cell Line Data Base: structure and recent improvements towards molecular authentication of human cell lines

by Stefania Parodi last modified 2009-11-03 17:33

Romano P, Mannello A, Aresu O, Armento M, Cesaro M, Parodi B. Cell Line Data Base: structure and recent improvements towards molecular authentication of human cell lines. Nucleic Acids Research 2009 37(Database issue):D925-D932

The Cell Line Data Base (CLDB) is a well known reference information source on human and animal cell lines including information on more than 6,000 cell lines. Main biological features are coded according to controlled vocabularies derived from international lists and taxonomies. HyperCLDB (http://bioinformatics.istge.it/hypercldb/) is an hypertext version of CLDB that improves data accessibility by also allowing information retrieval through web spiders. Access to HyperCLDB is provided through indexes of biological characteristics and navigation in the hypertext is granted by many internal links. HyperCLDB also includes links to external resources. Recently, an interest was raised for a reference nomenclature for cell lines and CLDB was seen as an authoritative system.  Furthermore, to overcome cell lines misidentification problem, molecular authentication methods, such as fingerprinting, single-locus Short Tandem Repeat (STR) profile and Single Nucleotide Polymorphisms (SNPs) validation, were proposed. Since this data is distributed, a reference portal on authentication of human cell lines is needed. We present here the architecture and contents of CLDB, its recent enhancements and perspectives. We also present a new related database, the Cell Line Integrated Molecular Authentication (CLIMA) Data Base (http://bioinformatics.istge.it/clima/), that allows to link authentication data to actual cell lines.


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